Because dandy walker syndrome interferes with the normal function of the brain, it might be that people with that condition are somewhat more likely to have cluster headaches (and migraine, depression, epilepsy, and a few dozen other neurological conditions). 

Dandy Walker is much rarer than cluster headaches (1 in 25,000 for DW, 1 in 1,000 for CH). Also, DW is usually seen in females.  There might be a link for some individuals, but for most people with clusters, there is no relation between the 2 conditions.